PUBLICATIONS

HIGHLIGHTED WORKS

• N'Guessan, A., Tsitouras, A., Sanchez-Quete, F., Goitom, E., Reiling, S. J., Galvez, J. H., ... & Shapiro, B. J. (2022). Detection of prevalent SARS-CoV-2 variant lineages in wastewater and clinical sequences from cities in Quebec, Canada. medRxiv.

• Oikonomopoulos S, Bayega A, Fahiminiya S, Djambazian H, Berube P, Ragoussis J. Methodologies for Transcript Profiling Using Long-Read Technologies. Front Genet. 2020;11:606. doi: 10.3389/fgene.2020.00606. eCollection 2020. Review. PubMed PMID: 32733532; PubMed Central PMCID: PMC7358353.

• Oikonomopoulos S, Wang YC, Djambazian H, Badescu D, Ragoussis J. Benchmarking of the Oxford Nanopore MinION sequencing for quantitative and qualitative assessment of cDNA populations. Sci Rep. 2016 Aug 24;6:31602. doi: 10.1038/srep31602. PubMed PMID: 27554526; PubMed Central PMCID: PMC4995519.

• de Kock L, Wang YC, Revil T, Badescu D, Rivera B, Sabbaghian N, Wu M, Weber E, Sandoval C, Hopman SM, Merks JH, van Hagen JM, Bouts AH, Plager DA, Ramasubramanian A, Forsmark L, Doyle KL, Toler T, Callahan J, Engelenberg C, Bouron-Dal Soglio D, Priest JR, Ragoussis J, Foulkes WD. High-sensitivity sequencing reveals multi-organ somatic mosaicism causing DICER1 syndrome. J Med Genet. 2016 Jan;53(1):43-52. doi: 10.1136/jmedgenet-2015-103428. Epub 2015 Oct 16. PubMed PMID: 26475046.

• Li R, Couturier C, Savage P, Monlong J, Bourque G, Petrecca K, Park M, Ragoussis J. Abstract 2177: Sensitive single cell copy number profiling using a novel microfluidic droplet based platform Cancer Research. 78: 2177-2177. DOI: 10.1158/1538-7445.Am2018-2177

• Murall CL, Fournier E, Galvez JH, N'Guessan A, Reiling SJ, Quirion PO, Naderi S, Roy AM, Chen SH, Stretenowich P, Bourgey M. A small number of early introductions seeded widespread transmission of SARS-CoV-2 in Québec, Canada. medRxiv. 2021 Jan 1; doi:https://doi.org/10.1101/2021.03.20.21253835

MOST RECENT PUBLICATIONS

• Latest single-cell genomics paper from the AGT group

• Wastewater work in the news

• N'Guessan, A., Tsitouras, A., Sanchez-Quete, F., Goitom, E., Reiling, S. J., Galvez, J. H., ... & Shapiro, B. J. (2022). Detection of prevalent SARS-CoV-2 variant lineages in wastewater and clinical sequences from cities in Quebec, Canada. medRxiv.

• Teng K, Ford MJ, Harwalkar K, Li Y, Pacis AS, Farnell D, Yamanaka N, Wang YC, Badescu D, Ton Nu TN, Ragoussis J, Huntsman DG, Arseneau J, Yamanaka Y. Modeling High-Grade Serous Ovarian Carcinoma Using a Combination of In Vivo Fallopian Tube Electroporation and CRISPR-Cas9-Mediated Genome Editing. Cancer Res. 2021 Oct 15;81(20):5147-5160. doi: 10.1158/0008-5472.CAN-20-1518. Epub 2021 Jul 23. PubMed PMID: 34301761.

• Ford MJ, Harwalkar K, Pacis AS, Maunsell H, Wang YC, Badescu D, Teng K, Yamanaka N, Bouchard M, Ragoussis J, Yamanaka Y. Oviduct epithelial cells constitute two developmentally distinct lineages that are spatially separated along the distal-proximal axis. Cell Rep. 2021 Sep 7;36(10):109677. doi: 10.1016/j.celrep.2021.109677. PubMed PMID: 34496237.

• Dankner M, Caron M, Al-Saadi T, Yu W, Ouellet V, Ezzeddine R, Maritan SM, Annis MG, Le PU, Nadaf J, Neubarth NS, Savage P, Zuo D, Couturier CP, Monlong J, Djambazian H, Altoukhi H, Bourque G, Ragoussis J, Diaz RJ, Park M, Guiot MC, Lam S, Petrecca K, Siegel PM. Invasive growth associated with cold-inducible RNA-binding protein expression drives recurrence of surgically resected brain metastases. Neuro Oncol. 2021 Sep 1;23(9):1470-1480. doi: 10.1093/neuonc/noab002. PubMed PMID: 33433612; PubMed Central PMCID: PMC8408858.

• Mérot C, Berdan EL, Cayuela H, Djambazian H, Ferchaud AL, Laporte M, Normandeau E, Ragoussis J, Wellenreuther M, Bernatchez L. Locally Adaptive Inversions Modulate Genetic Variation at Different Geographic Scales in a Seaweed Fly. Mol Biol Evol. 2021 Aug 23;38(9):3953-3971. doi: 10.1093/molbev/msab143. PubMed PMID: 33963409; PubMed Central PMCID: PMC8382925.

• Sène MA, Kiesslich S, Djambazian H, Ragoussis J, Xia Y, Kamen AA. Haplotype-resolved de novo assembly of the Vero cell line genome. NPJ Vaccines. 2021 Aug 20;6(1):106. doi: 10.1038/s41541-021-00358-9. PubMed PMID: 34417462; PubMed Central PMCID: PMC8379168.